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aaaaaaaaaaaaaaaaa Xiangfeng Wang Ph.D candidate
aaaaaaaaaaaaaaaaaaaaMCDB department, Yale University, USA
aaaaaaaaaaaaaaaaaaaaCollege of Life Sciences, Peking University
aaaaaaaaaaaaaaaaaaaaNational Institute of Biological Sciences
aaaaaaaaaaaaaaaaaaaaBeijing Genomics Institute, CAS
aaaaaaaaaaaaaaaaaaaaPhone: 203-508-4833
aaaaaaaaaaaaaaaaaaaaXiangfeng.Wang@yale.edu
aaaaaaaaaaaaaaaaaaaaWangxiangfeng@nibs.ac.cn
aaaaaaaaaaaaaaaaaaaaWangxiangfeng@genomics.org.cn
Education:
Center of Bioinformatics, College of Life Sciences, Peking University
Ph.D candidate, September 2002 to Present
College of Biological Sciences, China Agricultural University
Bachelor of Science, September 1998 to March 2002
Research experience
6/2006 to Present Department of Molecular, Cell, and Development Biology,
Yale University, New Haven CT, USA
Exchange student of Peking-Yale Joint Research Center
wewwwwwwwwwwwwwwwww Advisor: Prof. Songgang Li
Co-advisor: Prof. Xing Wang Deng
qqqqqqqqqqqqqqqqqqqqqqqProject: Rice ssb. japonica tiling-path microarray analysis; Genome-wide global identification and qqqqqqqqqqqqqqqqqqqqqqqcharacterization of novel transcriptionally active regions in rice.
2/2004 to 6/2006 National Institute of Biological Sciences, Beijing, China
Joint graduate student program of PKU and NIBS
Advisor: Prof. Songgang Li
Co-advisor: Prof. Xing Wang Deng
Project: Rice transcriptome analysis by whole genome tiling-path microarray; Genomic basis and aaaaaaaaaaaaaaaaaaaaaaaaaamechanism of rice domestication and heterosis.
3/2003 to 2/2004 Beijing Genomics Institute, Chinese Academy of Sciences
Joint graduate student program of BGI and PKU
Advisor: Prof. Songgang Li
Supervisor: Dr. Jun Wang
Project: Rice whole genome oligonucleotide microarray expression pattern and comparative genomics aaaaaaaaaaaaaaaaaaaaaaaaaaanalysis.
3/2002 to 7/2002 National Bioinformatics Center, Beijing Genomics Institute
Undergraduate internship of China Agricultural University
Supervisor: Prof. Songgang Li
Project: Protein mass spectrometry data analysis, peptide database establishment, and algorithm aaaaaaaaaaaaaaaaaaaaaaaaaadevelopment.
Publication List (2006 & 2005)
* Equally contributed first author.
NMPP: a user-customized NimbleGen microarray data processing pipeline
Xiangfeng Wang*, Hang He*, Lei Li, Runsheng Chen, Xing Wang Deng, Songgang Li†
Bioinformatics. 2006 Dec; 22(23): 2955-7. Epub 2006 Oct 12
Global Identification and Characterization of Novel Transcriptionally Active Regions in Rice
Lei Li1*, Xiangfeng Wang1,2*, Rajkumar Sasidharan3, Viktor Stolc1, 4, Wei Deng5, Hang He5, Xuewei Chen6, Waraporn Tongprasit7, Jan Korbel3, Pamela Ronald6, Runsheng Chen5, Mark Gerstein3, and Xing Wang Deng1†
PLoS One 2006, Accepted
Rice employs largely organ-specific programs in regulation of genome expression in response to drought and high-salinity stresses
Junli Zhou1,2*, Xiangfeng Wang1,4*, Yuling Jiao2,Yonghua Qin3, Xigang Liu1, Kun He1,2, Chen Chen4, Ligeng Ma1, Jian Wang4, Lizhong Xiong3, Qifa Zhang3, Liumin Fan1,5 and Xing Wang Deng1,2
Plant Mol Bio. . 2007 Jan 16; Epub.
Analysis of oligo hybridization properties by high-resolution tiling arrays in rice
Xiangfeng Wang, Lei Li, Chen Chen, Jun Wang, Songgang Li, and Xing Wang Deng†
Proceedings of 5th International Rice Genetics Symposium, 19-23 November 2005 Manila, Philippines
Genome wide transcription analyses in rice using tiling microarrays
Lei Li1, 2*, Xiangfeng Wang1, 3, 4*, Viktor Stolc2, 5*, Xueyong Li 2, 6, Dongfen Zhang7, Ning Su2, Waraporn Tongprasit8, Songgang Li2, Zhukuan Cheng7, Jun Wang4, and Xing Wang Deng1, 2
Nature Genetics. 2006 Jan;38(1):124-129. Epub 2005 Dec 20.
A tiling microarray expression analysis of rice chromosome 4 suggests a chromosomal level regulation of transcription.
Yuling Jiao*, Peixin Jia*, Xiangfeng Wang*, Ning Su , Shuliang Yu , Dongfen Zhang, Ligeng Ma, Qi Feng, Zhaoqing Jin, Lei Li, Yongbiao Xue, Zhukuan Cheng, Hongyu Zhao, Bin Han and Xing Wang Deng.
Plant Cell. 2005 June; 17(6):1641-57. Epub 2005 Apr 29
Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture.
Lei Li*, Xiangfeng Wang*, Mian Xia, Viktor Stolc, Ning Su, Zhiyu Peng, Waraporn Tongprasit, Songgang Li, Jun Wang, Xiping Wang, Xing Wang Deng.
Genome Biology. 2005 Jun ;6(6):R52. Epub 2005 May 27
A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray
Viktor Stolc1, 2*, Lei Li 1*, Xiangfeng Wang3, 4,5*, Xueyong Li1,6, Ning Su1, Waraporn
Tongprasit8, Bin Han8, Yongbiao Xue9, Jiayang Li9, Michael Snyder1, Mark Gerstein10, Jun Wang4 and Xing Wang Deng1,*
Plant Molecular Biology. 2005 59:137–149
A microarray analysis of the rice transcriptome and its comparison to Arabidopsis
Ligeng Ma*, Chen Chen*, Xigang Liu, Yuling Jiao, Ning Su, Lin Li, Xiangfeng Wang, Mengliang Cao, Ning Sun, Xiuqing Zhang, Jingyue Bao, Jian Li, Soren Pedersen, Lars Bolund, Hongyu Zhao, Longping Yuan, Gane Ka-Shu Wong, Jun Wang, Xing Wang Deng, and Jian Wang
Genome Research. 2005 September; 15(9):1274-1283
Toward genome-wide transcriptional analysis in rice using MAS oligonucelotide tiling-path microarrays.
Lei Li, Xiangfeng Wang,Viktor Stolc, Xing Wang Deng
In Rice Is Life: Scientific Perspectives For The 21st Century, 2005: 80-83. Proceedings of the World Rice Research Conference held in Tokyo and Tsukuba, Japan |
